pybird package
EFT predictions for biased tracers in redshift space.
Submodules
- pybird.bird module
BirdBird.coBird.with_biasBird.eft_basisBird.with_stochBird.with_nnlo_countertermBird.with_tidal_alignmentsBird.kinBird.PinBird.PlinBird.P11Bird.P22Bird.P13Bird.PsBird.C11Bird.C22lBird.C13lBird.CctBird.CfBird.fullPsBird.fullCfBird.b11Bird.b13Bird.b22Bird.bctBird.fBird.DABird.HBird.zBird.setcosmo()Bird.setBias()Bird.setPs()Bird.setCf()Bird.setPsCf()Bird.setfullPs()Bird.setfullCf()Bird.setPsCfl()Bird.reducePsCfl()Bird.setcosmo()Bird.setBias()Bird.setPs()Bird.setCf()Bird.setPsCf()Bird.setfullPs()Bird.setfullCf()Bird.setPsCfl()Bird.reducePsCfl()Bird.reducePsCflf()Bird.setreducePslb()Bird.setreduceCflb()Bird.subtractShotNoise()Bird.concatenate()Bird.unravel()Bird.setIRPs()Bird.setresumPs()Bird.setresumCf()Bird.settime()
- pybird.common module
CommonCommon.NlCommon.kminCommon.kmaxCommon.kCommon.NkCommon.sCommon.NsCommon.eft_basisCommon.halohaloCommon.ndCommon.kmCommon.krCommon.N11Common.NctCommon.N22Common.N13Common.NloopCommon.NnnloCommon.NstCommon.with_timeCommon.with_cfCommon.with_irmatchCommon.with_uvmatchCommon.exact_timeCommon.quintessenceCommon.with_tidal_alignmentsCommon.nonequaltimeCommon.keep_loop_pieces_independentCommon.with_emuCommon.optiresumCommon.NIRCommon.NaCommon.NnCommon.l11Common.lctCommon.l22Common.l13Common.lnnlo
- pybird.config module
- pybird.correlator module
CorrelatorCorrelator.cosmo_catalogCorrelator.c_catalogCorrelator.cosmoCorrelator.cCorrelator.biasCorrelator.birdCorrelator.coCorrelator.nonlinearCorrelator.resumCorrelator.projectionCorrelator.matchingCorrelator.emulatorCorrelator.info()Correlator.set()Correlator.compute()Correlator.get()Correlator.getmarg()Correlator.load_engines()Correlator.info()Correlator.set()Correlator.compute()Correlator.get()Correlator.getmarg()Correlator.load_engines()
BiasCorrelatortranslate_catalog_to_dict()typename()Option
- pybird.cosmo module
- pybird.emulator module
EmulatorEmulator.emu_pathEmulator.knots_pathEmulator.kmax_emuEmulator.coEmulator.knotsEmulator.logknotsEmulator.emu_ploopl_monoEmulator.emu_ploopl_quadEmulator.emu_ploopl_hexEmulator.emu_IRPs11Emulator.emu_IRPsctEmulator.emu_IRPsloop_monoEmulator.emu_IRPsloop_quadEmulator.emu_IRPsloop_hexEmulator.load_models()Emulator.make_params()Emulator.setPsCfl()Emulator.PsCf_resum()Emulator.load_models()Emulator.make_params()Emulator.setPsCfl()Emulator.PsCf_resum()
- pybird.fake module
get_cov_gauss()FakeFake.n_skyFake.cosmoFake.boltzmannFake.zminFake.zmaxFake.zeffFake.VeffFake.degsqFake.P0Fake.Omega_m_fidFake.kminFake.kmaxFake.dkFake.path_to_dataFake.fake_data_filenameFake.path_to_configFake.fake_likelihood_config_filenameFake.fiducial_nuisanceFake.cFake.eFake.nbarFake.H_fidFake.D_fidFake.kdFake.to_list()Fake.set_survey_specific()Fake.set_correlator()Fake.set_nuisance()Fake.set()Fake.test()Fake.to_list()Fake.set_survey_specific()Fake.set_correlator()Fake.set_nuisance()Fake.set()Fake.test()
- pybird.fftlog module
- pybird.fourier module
FourierTransformFourierTransform.coFourierTransform.fftFourierTransform.fftsettingsFourierTransform.MFourierTransform.kPowFourierTransform.fftPs2CfFourierTransform.fftPs2CfsettingsFourierTransform.MPs2CfFourierTransform.sPowFourierTransform.setkPow()FourierTransform.setM()FourierTransform.FT_Cf2Ps()FourierTransform.Cf2Ps()FourierTransform.setsPow()FourierTransform.setMPs2Cf()FourierTransform.FT_Ps2Cf()FourierTransform.Ps2Cf()FourierTransform.setkPow()FourierTransform.setM()FourierTransform.FT_Cf2Ps()FourierTransform.Cf2Ps()FourierTransform.setsPow()FourierTransform.setMPs2Cf()FourierTransform.FT_Ps2Cf()FourierTransform.Ps2Cf()
- pybird.greenfunction module
GreenFunctionGreenFunction.Omega0_mGreenFunction.wGreenFunction.quintessenceGreenFunction.Omega0_kGreenFunction.vectorizeGreenFunction.OmegaL_by_Omega_mGreenFunction.wcdmGreenFunction.epsrelGreenFunction.C()GreenFunction.H()GreenFunction.H3()GreenFunction.Omega_m()GreenFunction.D()GreenFunction.DD()GreenFunction.fplus()GreenFunction.Dminus()GreenFunction.DDminus()GreenFunction.fminus()GreenFunction.W()GreenFunction.G1d()GreenFunction.I1d()GreenFunction.mG1d()GreenFunction.G()GreenFunction.IU1d()GreenFunction.IV11d()GreenFunction.IV11t()GreenFunction.mU1d()GreenFunction.mV11d()GreenFunction.mV11t()GreenFunction.Y()GreenFunction.C()GreenFunction.H()GreenFunction.H3()GreenFunction.Omega_m()GreenFunction.D()GreenFunction.DD()GreenFunction.fplus()GreenFunction.Dminus()GreenFunction.DDminus()GreenFunction.fminus()GreenFunction.W()GreenFunction.G1d()GreenFunction.G2d()GreenFunction.G1t()GreenFunction.G2t()GreenFunction.I1d()GreenFunction.I2d()GreenFunction.I1t()GreenFunction.I2t()GreenFunction.mG1d()GreenFunction.mG2d()GreenFunction.mG1t()GreenFunction.mG2t()GreenFunction.G()GreenFunction.IU1d()GreenFunction.IU2d()GreenFunction.IU1t()GreenFunction.IU2t()GreenFunction.IV11d()GreenFunction.IV12d()GreenFunction.IV21d()GreenFunction.IV22d()GreenFunction.IV11t()GreenFunction.IV12t()GreenFunction.IV21t()GreenFunction.IV22t()GreenFunction.mU1d()GreenFunction.mU2d()GreenFunction.mU1t()GreenFunction.mU2t()GreenFunction.mV11d()GreenFunction.mV12d()GreenFunction.mV21d()GreenFunction.mV22d()GreenFunction.mV11t()GreenFunction.mV12t()GreenFunction.mV21t()GreenFunction.mV22t()GreenFunction.Y()
- pybird.inference module
InferenceInference.cosmo_prior_covmatInference.cosmo_prior_dictInference.likelihood_configInference.LInference.lInference.MInference.need_cosmo_updateInference.TInference.biasInference.set_nuisance()Inference.set_config_and_boltzmann()Inference.set_need_cosmo_update()Inference.get_param_name_and_pos()Inference.init()Inference.set_sampler()Inference.set_minimizer()Inference.set_debiasing()Inference.set_model_cache()Inference.set_fake()Inference.set_taylor()Inference._set_taylor()Inference.update_boltzmann()Inference._loglkl()Inference._logm()Inference._logp()Inference.set_logp()Inference.set_nuisance()Inference.set_config_and_boltzmann()Inference.set_need_cosmo_update()Inference.get_param_name_and_pos()Inference.init()Inference.set_sampler()Inference.set_minimizer()Inference.set_debiasing()Inference.set_model_cache()Inference.set_emu()Inference.set_fake()Inference.plot_bestfit()Inference.set_taylor()Inference.update_boltzmann()Inference.set_logp()
- pybird.integrated_model_jax module
NetworkCustomActivation_jaxinsert_zero_columns()IntegratedModelIntegratedModel.modelIntegratedModel.input_scalerIntegratedModel.output_scalerIntegratedModel.offsetIntegratedModel.zero_columnsIntegratedModel.rescaling_factorIntegratedModel.temp_fileIntegratedModel.train_lossesIntegratedModel.val_lossesIntegratedModel.log_preprocessIntegratedModel.pcaIntegratedModel.pca_scalerIntegratedModel.verboseIntegratedModel.scaler_mean_inIntegratedModel.scaler_scale_inIntegratedModel.scaler_mean_outIntegratedModel.scaler_scale_outIntegratedModel.pca_componentsIntegratedModel.pca_meanIntegratedModel.pca_scaler_meanIntegratedModel.pca_scaler_scaleIntegratedModel.predict()IntegratedModel.restore()IntegratedModel.predict()IntegratedModel.restore()
- pybird.io_pb module
get_dict_from_hdf5()save_dict_to_hdf5()ReadWriteReadWrite.NoneReadWrite.read()ReadWrite.check()ReadWrite.config()ReadWrite.format()ReadWrite.write()ReadWrite.write_common()ReadWrite.write_pk()ReadWrite.write_cf()ReadWrite.write_bao_rec()ReadWrite.set_header()ReadWrite.get_wedge_rotation_matrix()ReadWrite.read()ReadWrite.check()ReadWrite.config()ReadWrite.format()ReadWrite.write()ReadWrite.write_common()ReadWrite.write_pk()ReadWrite.write_cf()ReadWrite.write_bao_rec()ReadWrite.set_header()ReadWrite.get_wedge_rotation_matrix()
- pybird.jax_special module
- pybird.likelihood module
LikelihoodLikelihood.cLikelihood.ioLikelihood.c_skyLikelihood.d_skyLikelihood.nskyLikelihood.m_skyLikelihood.y_skyLikelihood.p_skyLikelihood.y_allLikelihood.p_allLikelihood.correlator_skyLikelihood.alpha_skyLikelihood.outLikelihood.Tng_k_cacheLikelihood.b_nameLikelihood.bg_nameLikelihood.bg_prior_meanLikelihood.bg_prior_sigmaLikelihood.bng_nameLikelihood.bng_prior_meanLikelihood.bng_prior_sigmaLikelihood.bnlog_nameLikelihood.bnlog_prior_meanLikelihood.bnlog_prior_sigmaLikelihood.NgLikelihood.marg_lklLikelihood.F2_bg_prior_matrixLikelihood.F1_bg_prior_meanLikelihood.chi2_bg_prior_meanLikelihood.prior_inv_corr_matrixLikelihood.class_settingsLikelihood.kinLikelihood.optipath_chi2Likelihood.optipath_F2Likelihood.optipath_F1Likelihood.optipath_bgLikelihood.set_data()Likelihood.set_config()Likelihood.set_class_settings()Likelihood.set_eft_parameters()Likelihood.set_boost()Likelihood.set_model_cache()Likelihood.get_chi2_marg()Likelihood.get_chi2_non_marg()Likelihood.get_chi2_for_hessian()Likelihood.get_prior()Likelihood.get_alpha_bao_rec()Likelihood.set_bao_rec()Likelihood.get_loop()Likelihood.loglkl()Likelihood.get_eft_parameters()Likelihood.set_out()Likelihood.write()Likelihood.set_data()Likelihood.set_config()Likelihood.set_class_settings()Likelihood.set_eft_parameters()Likelihood.set_boost()Likelihood.get_chi2_marg()Likelihood.get_chi2_non_marg()Likelihood.get_chi2_for_hessian()Likelihood.get_prior()Likelihood.get_alpha_bao_rec()Likelihood.set_bao_rec()Likelihood.get_loop()Likelihood.loglkl()Likelihood.get_eft_parameters()Likelihood.set_model_cache()Likelihood.set_out()Likelihood.write()
get_corr()
- pybird.matching module
- pybird.module module
- pybird.nnlo module
NNLO_countertermNNLO_counterterm.coNNLO_counterterm.fftsettingsNNLO_counterterm.fftNNLO_counterterm.McfNNLO_counterterm.sPowNNLO_counterterm.kdeepNNLO_counterterm.smask_outNNLO_counterterm.smask_inNNLO_counterterm.swinNNLO_counterterm.setMcf()NNLO_counterterm.setsPow()NNLO_counterterm.CoefsPow()NNLO_counterterm.Cf()NNLO_counterterm.Ps()NNLO_counterterm.setMcf()NNLO_counterterm.setsPow()NNLO_counterterm.CoefsPow()NNLO_counterterm.Cf()NNLO_counterterm.Ps()
NNLO_higher_derivativeNNLO_higher_derivative.coNNLO_higher_derivative.fftsettingsNNLO_higher_derivative.fftNNLO_higher_derivative.MNNLO_higher_derivative.sPowNNLO_higher_derivative.kdeepNNLO_higher_derivative.kmaskNNLO_higher_derivative.smask_outNNLO_higher_derivative.smask_inNNLO_higher_derivative.swinNNLO_higher_derivative.kNNLO_higher_derivative.setsPow()NNLO_higher_derivative.setM()NNLO_higher_derivative.FT()NNLO_higher_derivative.Ps2Cf()NNLO_higher_derivative.Cf()NNLO_higher_derivative.Ps()NNLO_higher_derivative.setsPow()NNLO_higher_derivative.setM()NNLO_higher_derivative.FT()NNLO_higher_derivative.Ps2Cf()NNLO_higher_derivative.Cf()NNLO_higher_derivative.Ps()
- pybird.nonlinear module
NonLinearNonLinear.coNonLinear.fftsettingsNonLinear.fftNonLinear.pyeggNonLinear.M22NonLinear.M13NonLinear.Mcf11NonLinear.MlNonLinear.Mcf22NonLinear.Mcf13NonLinear.McfctNonLinear.kPowNonLinear.sPowNonLinear.optipathP22NonLinear.optipathC13lNonLinear.optipathC22lNonLinear.setM22()NonLinear.setM13()NonLinear.setMcf11()NonLinear.setMl()NonLinear.setMcf22()NonLinear.setMcf13()NonLinear.setMcfct()NonLinear.setkPow()NonLinear.setsPow()NonLinear.CoefkPow()NonLinear.CoefsPow()NonLinear.makeP22()NonLinear.makeP13()NonLinear.makeC11()NonLinear.makeCct()NonLinear.makeC22l()NonLinear.makeC13l()NonLinear.Coef()NonLinear.Ps()NonLinear.Cf()NonLinear.PsCf()NonLinear.clean_lowk()NonLinear.setM22()NonLinear.setM13()NonLinear.setMcf11()NonLinear.setMl()NonLinear.setMcf22()NonLinear.setMcf13()NonLinear.setMcfct()NonLinear.setkPow()NonLinear.setsPow()NonLinear.CoefkPow()NonLinear.CoefsPow()NonLinear.makeP22()NonLinear.makeP13()NonLinear.makeC11()NonLinear.makeCct()NonLinear.makeC22l()NonLinear.makeC13l()NonLinear.Coef()NonLinear.Ps()NonLinear.Cf()NonLinear.PsCf()NonLinear.clean_lowk()
M13a()M22a()
- pybird.projection module
cH()DgN()fN()Hubble()DA()W2D()Hllp()fllp_IR()fllp_UV()ProjectionProjection.coProjection.cfProjection.xoutProjection.H_fidProjection.D_fidProjection.muaccProjection.arrayLegendremusgridProjection.arrayLegendremukgridProjection.arr_pProjection.mat_kpProjection.binvolProjection.pointsProjection.wedge_mat_wlProjection.zzProjection.nzProjection.n1Projection.LProjection.LpProjection.ftProjection.get_AP_param()Projection.integrAP()Projection.AP()Projection.integrWindow()Projection.Window()Projection.dPuncorr()Projection.dPcorr()Projection.fibcolWindow()Projection.loadBinning()Projection.integrBinning()Projection.xbinning()Projection.xdata()Projection.integrWedges()Projection.Wedges()Projection.Wedges_external()Projection.mesheval1d()Projection.redshift()Projection.get_AP_param()Projection.AP()Projection.set_AP()Projection.apply_AP()Projection.integrAP()Projection.integrWindow()Projection.Window()Projection.dPuncorr()Projection.dPcorr()Projection.fibcolWindow()Projection.loadBinning()Projection.integrBinning()Projection.xbinning()Projection.xdata()Projection.integrWedges()Projection.Wedges()Projection.Wedges_external()Projection.mesheval1d()Projection.redshift()
- pybird.resum module
ResumResum.coResum.LambdaIRResum.srResum.sbaoResum.snobaoResum.krResum.k2pResum.fftsettingsResum.fftResum.MResum.kPowResum.XfftsettingsResum.XfftResum.XMResum.XsPowResum.CfftsettingsResum.CfftResum.MlResum.sPowResum.dampPsResum.dampCfResum.optipath_cfResum.optipath_XpYpCResum.optipath_IRPsResum.optipath_k2IRPsResum.setXsPow()Resum.setXM()Resum.IRFilters()Resum.setkPow()Resum.setM()Resum.IRn()Resum.extractBAO()Resum.setXpYp()Resum.makeQ()Resum.setMl()Resum.setsPow()Resum.Ps2Cf()Resum.IRCf()Resum.IRPs()Resum.PsCf()Resum.Ps()Resum.setXsPow()Resum.setXM()Resum.IRFilters()Resum.setkPow()Resum.setM()Resum.IRn()Resum.extractBAO()Resum.setXpYp()Resum.makeQ()Resum.setMl()Resum.setsPow()Resum.Ps2Cf()Resum.IRCf()Resum.PsCf()Resum.Ps()Resum.getIRPs()Resum.IRPs()
- pybird.resumfactor module
- pybird.run module
- pybird.symbolic module
- pybird.symbolic_pofk_linear module
- pybird.utils module