pybird package
EFT predictions for biased tracers in redshift space.
Submodules
- pybird.bird module
Bird
Bird.co
Bird.with_bias
Bird.eft_basis
Bird.with_stoch
Bird.with_nnlo_counterterm
Bird.with_tidal_alignments
Bird.kin
Bird.Pin
Bird.Plin
Bird.P11
Bird.P22
Bird.P13
Bird.Ps
Bird.C11
Bird.C22l
Bird.C13l
Bird.Cct
Bird.Cf
Bird.fullPs
Bird.fullCf
Bird.b11
Bird.b13
Bird.b22
Bird.bct
Bird.f
Bird.DA
Bird.H
Bird.z
Bird.setcosmo()
Bird.setBias()
Bird.setPs()
Bird.setCf()
Bird.setPsCf()
Bird.setfullPs()
Bird.setfullCf()
Bird.setPsCfl()
Bird.reducePsCfl()
Bird.setcosmo()
Bird.setBias()
Bird.setPs()
Bird.setCf()
Bird.setPsCf()
Bird.setfullPs()
Bird.setfullCf()
Bird.setPsCfl()
Bird.reducePsCfl()
Bird.reducePsCflf()
Bird.setreducePslb()
Bird.setreduceCflb()
Bird.subtractShotNoise()
Bird.concatenate()
Bird.unravel()
Bird.setIRPs()
Bird.setresumPs()
Bird.setresumCf()
Bird.settime()
- pybird.common module
Common
Common.Nl
Common.kmin
Common.kmax
Common.k
Common.Nk
Common.s
Common.Ns
Common.eft_basis
Common.halohalo
Common.nd
Common.km
Common.kr
Common.N11
Common.Nct
Common.N22
Common.N13
Common.Nloop
Common.Nnnlo
Common.Nst
Common.with_time
Common.with_cf
Common.with_irmatch
Common.with_uvmatch
Common.exact_time
Common.quintessence
Common.with_tidal_alignments
Common.nonequaltime
Common.keep_loop_pieces_independent
Common.with_emu
Common.optiresum
Common.NIR
Common.Na
Common.Nn
Common.l11
Common.lct
Common.l22
Common.l13
Common.lnnlo
- pybird.config module
- pybird.correlator module
Correlator
Correlator.cosmo_catalog
Correlator.c_catalog
Correlator.cosmo
Correlator.c
Correlator.bias
Correlator.bird
Correlator.co
Correlator.nonlinear
Correlator.resum
Correlator.projection
Correlator.matching
Correlator.emulator
Correlator.info()
Correlator.set()
Correlator.compute()
Correlator.get()
Correlator.getmarg()
Correlator.load_engines()
Correlator.info()
Correlator.set()
Correlator.compute()
Correlator.get()
Correlator.getmarg()
Correlator.load_engines()
BiasCorrelator
translate_catalog_to_dict()
typename()
Option
- pybird.cosmo module
- pybird.emulator module
Emulator
Emulator.emu_path
Emulator.knots_path
Emulator.kmax_emu
Emulator.co
Emulator.knots
Emulator.logknots
Emulator.emu_ploopl_mono
Emulator.emu_ploopl_quad
Emulator.emu_ploopl_hex
Emulator.emu_IRPs11
Emulator.emu_IRPsct
Emulator.emu_IRPsloop_mono
Emulator.emu_IRPsloop_quad
Emulator.emu_IRPsloop_hex
Emulator.load_models()
Emulator.make_params()
Emulator.setPsCfl()
Emulator.PsCf_resum()
Emulator.load_models()
Emulator.make_params()
Emulator.setPsCfl()
Emulator.PsCf_resum()
- pybird.fake module
get_cov_gauss()
Fake
Fake.n_sky
Fake.cosmo
Fake.boltzmann
Fake.zmin
Fake.zmax
Fake.zeff
Fake.Veff
Fake.degsq
Fake.P0
Fake.Omega_m_fid
Fake.kmin
Fake.kmax
Fake.dk
Fake.path_to_data
Fake.fake_data_filename
Fake.path_to_config
Fake.fake_likelihood_config_filename
Fake.fiducial_nuisance
Fake.c
Fake.e
Fake.nbar
Fake.H_fid
Fake.D_fid
Fake.kd
Fake.to_list()
Fake.set_survey_specific()
Fake.set_correlator()
Fake.set_nuisance()
Fake.set()
Fake.test()
Fake.to_list()
Fake.set_survey_specific()
Fake.set_correlator()
Fake.set_nuisance()
Fake.set()
Fake.test()
- pybird.fftlog module
- pybird.fourier module
FourierTransform
FourierTransform.co
FourierTransform.fft
FourierTransform.fftsettings
FourierTransform.M
FourierTransform.kPow
FourierTransform.fftPs2Cf
FourierTransform.fftPs2Cfsettings
FourierTransform.MPs2Cf
FourierTransform.sPow
FourierTransform.setkPow()
FourierTransform.setM()
FourierTransform.FT_Cf2Ps()
FourierTransform.Cf2Ps()
FourierTransform.setsPow()
FourierTransform.setMPs2Cf()
FourierTransform.FT_Ps2Cf()
FourierTransform.Ps2Cf()
FourierTransform.setkPow()
FourierTransform.setM()
FourierTransform.FT_Cf2Ps()
FourierTransform.Cf2Ps()
FourierTransform.setsPow()
FourierTransform.setMPs2Cf()
FourierTransform.FT_Ps2Cf()
FourierTransform.Ps2Cf()
- pybird.greenfunction module
GreenFunction
GreenFunction.Omega0_m
GreenFunction.w
GreenFunction.quintessence
GreenFunction.Omega0_k
GreenFunction.vectorize
GreenFunction.OmegaL_by_Omega_m
GreenFunction.wcdm
GreenFunction.epsrel
GreenFunction.C()
GreenFunction.H()
GreenFunction.H3()
GreenFunction.Omega_m()
GreenFunction.D()
GreenFunction.DD()
GreenFunction.fplus()
GreenFunction.Dminus()
GreenFunction.DDminus()
GreenFunction.fminus()
GreenFunction.W()
GreenFunction.G1d()
GreenFunction.I1d()
GreenFunction.mG1d()
GreenFunction.G()
GreenFunction.IU1d()
GreenFunction.IV11d()
GreenFunction.IV11t()
GreenFunction.mU1d()
GreenFunction.mV11d()
GreenFunction.mV11t()
GreenFunction.Y()
GreenFunction.C()
GreenFunction.H()
GreenFunction.H3()
GreenFunction.Omega_m()
GreenFunction.D()
GreenFunction.DD()
GreenFunction.fplus()
GreenFunction.Dminus()
GreenFunction.DDminus()
GreenFunction.fminus()
GreenFunction.W()
GreenFunction.G1d()
GreenFunction.G2d()
GreenFunction.G1t()
GreenFunction.G2t()
GreenFunction.I1d()
GreenFunction.I2d()
GreenFunction.I1t()
GreenFunction.I2t()
GreenFunction.mG1d()
GreenFunction.mG2d()
GreenFunction.mG1t()
GreenFunction.mG2t()
GreenFunction.G()
GreenFunction.IU1d()
GreenFunction.IU2d()
GreenFunction.IU1t()
GreenFunction.IU2t()
GreenFunction.IV11d()
GreenFunction.IV12d()
GreenFunction.IV21d()
GreenFunction.IV22d()
GreenFunction.IV11t()
GreenFunction.IV12t()
GreenFunction.IV21t()
GreenFunction.IV22t()
GreenFunction.mU1d()
GreenFunction.mU2d()
GreenFunction.mU1t()
GreenFunction.mU2t()
GreenFunction.mV11d()
GreenFunction.mV12d()
GreenFunction.mV21d()
GreenFunction.mV22d()
GreenFunction.mV11t()
GreenFunction.mV12t()
GreenFunction.mV21t()
GreenFunction.mV22t()
GreenFunction.Y()
- pybird.inference module
Inference
Inference.cosmo_prior_covmat
Inference.cosmo_prior_dict
Inference.likelihood_config
Inference.L
Inference.l
Inference.M
Inference.need_cosmo_update
Inference.T
Inference.bias
Inference.set_nuisance()
Inference.set_config_and_boltzmann()
Inference.set_need_cosmo_update()
Inference.get_param_name_and_pos()
Inference.init()
Inference.set_sampler()
Inference.set_minimizer()
Inference.set_debiasing()
Inference.set_model_cache()
Inference.set_fake()
Inference.set_taylor()
Inference._set_taylor()
Inference.update_boltzmann()
Inference._loglkl()
Inference._logm()
Inference._logp()
Inference.set_logp()
Inference.set_nuisance()
Inference.set_config_and_boltzmann()
Inference.set_need_cosmo_update()
Inference.get_param_name_and_pos()
Inference.init()
Inference.set_sampler()
Inference.set_minimizer()
Inference.set_debiasing()
Inference.set_model_cache()
Inference.set_fake()
Inference.set_taylor()
Inference.update_boltzmann()
Inference.set_logp()
- pybird.integrated_model_jax module
Network
CustomActivation_jax
insert_zero_columns()
IntegratedModel
IntegratedModel.model
IntegratedModel.input_scaler
IntegratedModel.output_scaler
IntegratedModel.offset
IntegratedModel.zero_columns
IntegratedModel.rescaling_factor
IntegratedModel.temp_file
IntegratedModel.train_losses
IntegratedModel.val_losses
IntegratedModel.log_preprocess
IntegratedModel.pca
IntegratedModel.pca_scaler
IntegratedModel.verbose
IntegratedModel.scaler_mean_in
IntegratedModel.scaler_scale_in
IntegratedModel.scaler_mean_out
IntegratedModel.scaler_scale_out
IntegratedModel.pca_components
IntegratedModel.pca_mean
IntegratedModel.pca_scaler_mean
IntegratedModel.pca_scaler_scale
IntegratedModel.predict()
IntegratedModel.restore()
IntegratedModel.predict()
IntegratedModel.restore()
- pybird.io_pb module
get_dict_from_hdf5()
save_dict_to_hdf5()
ReadWrite
ReadWrite.None
ReadWrite.read()
ReadWrite.check()
ReadWrite.config()
ReadWrite.format()
ReadWrite.write()
ReadWrite.write_common()
ReadWrite.write_pk()
ReadWrite.write_cf()
ReadWrite.write_bao_rec()
ReadWrite.set_header()
ReadWrite.get_wedge_rotation_matrix()
ReadWrite.read()
ReadWrite.check()
ReadWrite.config()
ReadWrite.format()
ReadWrite.write()
ReadWrite.write_common()
ReadWrite.write_pk()
ReadWrite.write_cf()
ReadWrite.write_bao_rec()
ReadWrite.set_header()
ReadWrite.get_wedge_rotation_matrix()
- pybird.jax_special module
- pybird.likelihood module
Likelihood
Likelihood.c
Likelihood.io
Likelihood.c_sky
Likelihood.d_sky
Likelihood.nsky
Likelihood.m_sky
Likelihood.y_sky
Likelihood.p_sky
Likelihood.y_all
Likelihood.p_all
Likelihood.correlator_sky
Likelihood.alpha_sky
Likelihood.out
Likelihood.Tng_k_cache
Likelihood.b_name
Likelihood.bg_name
Likelihood.bg_prior_mean
Likelihood.bg_prior_sigma
Likelihood.bng_name
Likelihood.bng_prior_mean
Likelihood.bng_prior_sigma
Likelihood.bnlog_name
Likelihood.bnlog_prior_mean
Likelihood.bnlog_prior_sigma
Likelihood.Ng
Likelihood.marg_lkl
Likelihood.F2_bg_prior_matrix
Likelihood.F1_bg_prior_mean
Likelihood.chi2_bg_prior_mean
Likelihood.prior_inv_corr_matrix
Likelihood.class_settings
Likelihood.kin
Likelihood.optipath_chi2
Likelihood.optipath_F2
Likelihood.optipath_F1
Likelihood.optipath_bg
Likelihood.set_data()
Likelihood.set_config()
Likelihood.set_class_settings()
Likelihood.set_eft_parameters()
Likelihood.set_boost()
Likelihood.set_model_cache()
Likelihood.get_chi2_marg()
Likelihood.get_chi2_non_marg()
Likelihood.get_chi2_for_hessian()
Likelihood.get_prior()
Likelihood.get_alpha_bao_rec()
Likelihood.set_bao_rec()
Likelihood.get_loop()
Likelihood.loglkl()
Likelihood.get_eft_parameters()
Likelihood.set_out()
Likelihood.write()
Likelihood.set_data()
Likelihood.set_config()
Likelihood.set_class_settings()
Likelihood.set_eft_parameters()
Likelihood.set_boost()
Likelihood.get_chi2_marg()
Likelihood.get_chi2_non_marg()
Likelihood.get_chi2_for_hessian()
Likelihood.get_prior()
Likelihood.get_alpha_bao_rec()
Likelihood.set_bao_rec()
Likelihood.get_loop()
Likelihood.loglkl()
Likelihood.get_eft_parameters()
Likelihood.set_model_cache()
Likelihood.set_out()
Likelihood.write()
get_corr()
- pybird.matching module
- pybird.module module
- pybird.nnlo module
NNLO_counterterm
NNLO_counterterm.co
NNLO_counterterm.fftsettings
NNLO_counterterm.fft
NNLO_counterterm.Mcf
NNLO_counterterm.sPow
NNLO_counterterm.kdeep
NNLO_counterterm.smask_out
NNLO_counterterm.smask_in
NNLO_counterterm.swin
NNLO_counterterm.setMcf()
NNLO_counterterm.setsPow()
NNLO_counterterm.CoefsPow()
NNLO_counterterm.Cf()
NNLO_counterterm.Ps()
NNLO_counterterm.setMcf()
NNLO_counterterm.setsPow()
NNLO_counterterm.CoefsPow()
NNLO_counterterm.Cf()
NNLO_counterterm.Ps()
NNLO_higher_derivative
NNLO_higher_derivative.co
NNLO_higher_derivative.fftsettings
NNLO_higher_derivative.fft
NNLO_higher_derivative.M
NNLO_higher_derivative.sPow
NNLO_higher_derivative.kdeep
NNLO_higher_derivative.kmask
NNLO_higher_derivative.smask_out
NNLO_higher_derivative.smask_in
NNLO_higher_derivative.swin
NNLO_higher_derivative.k
NNLO_higher_derivative.setsPow()
NNLO_higher_derivative.setM()
NNLO_higher_derivative.FT()
NNLO_higher_derivative.Ps2Cf()
NNLO_higher_derivative.Cf()
NNLO_higher_derivative.Ps()
NNLO_higher_derivative.setsPow()
NNLO_higher_derivative.setM()
NNLO_higher_derivative.FT()
NNLO_higher_derivative.Ps2Cf()
NNLO_higher_derivative.Cf()
NNLO_higher_derivative.Ps()
- pybird.nonlinear module
NonLinear
NonLinear.co
NonLinear.fftsettings
NonLinear.fft
NonLinear.pyegg
NonLinear.M22
NonLinear.M13
NonLinear.Mcf11
NonLinear.Ml
NonLinear.Mcf22
NonLinear.Mcf13
NonLinear.Mcfct
NonLinear.kPow
NonLinear.sPow
NonLinear.optipathP22
NonLinear.optipathC13l
NonLinear.optipathC22l
NonLinear.setM22()
NonLinear.setM13()
NonLinear.setMcf11()
NonLinear.setMl()
NonLinear.setMcf22()
NonLinear.setMcf13()
NonLinear.setMcfct()
NonLinear.setkPow()
NonLinear.setsPow()
NonLinear.CoefkPow()
NonLinear.CoefsPow()
NonLinear.makeP22()
NonLinear.makeP13()
NonLinear.makeC11()
NonLinear.makeCct()
NonLinear.makeC22l()
NonLinear.makeC13l()
NonLinear.Coef()
NonLinear.Ps()
NonLinear.Cf()
NonLinear.PsCf()
NonLinear.clean_lowk()
NonLinear.setM22()
NonLinear.setM13()
NonLinear.setMcf11()
NonLinear.setMl()
NonLinear.setMcf22()
NonLinear.setMcf13()
NonLinear.setMcfct()
NonLinear.setkPow()
NonLinear.setsPow()
NonLinear.CoefkPow()
NonLinear.CoefsPow()
NonLinear.makeP22()
NonLinear.makeP13()
NonLinear.makeC11()
NonLinear.makeCct()
NonLinear.makeC22l()
NonLinear.makeC13l()
NonLinear.Coef()
NonLinear.Ps()
NonLinear.Cf()
NonLinear.PsCf()
NonLinear.clean_lowk()
M13a()
M22a()
- pybird.projection module
cH()
DgN()
fN()
Hubble()
DA()
W2D()
Hllp()
fllp_IR()
fllp_UV()
Projection
Projection.co
Projection.cf
Projection.xout
Projection.H_fid
Projection.D_fid
Projection.muacc
Projection.arrayLegendremusgrid
Projection.arrayLegendremukgrid
Projection.arr_p
Projection.mat_kp
Projection.binvol
Projection.points
Projection.wedge_mat_wl
Projection.zz
Projection.nz
Projection.n1
Projection.L
Projection.Lp
Projection.ft
Projection.get_AP_param()
Projection.integrAP()
Projection.AP()
Projection.integrWindow()
Projection.Window()
Projection.dPuncorr()
Projection.dPcorr()
Projection.fibcolWindow()
Projection.loadBinning()
Projection.integrBinning()
Projection.xbinning()
Projection.xdata()
Projection.integrWedges()
Projection.Wedges()
Projection.Wedges_external()
Projection.mesheval1d()
Projection.redshift()
Projection.get_AP_param()
Projection.integrAP()
Projection.AP()
Projection.integrWindow()
Projection.Window()
Projection.dPuncorr()
Projection.dPcorr()
Projection.fibcolWindow()
Projection.loadBinning()
Projection.integrBinning()
Projection.xbinning()
Projection.xdata()
Projection.integrWedges()
Projection.Wedges()
Projection.Wedges_external()
Projection.mesheval1d()
Projection.redshift()
- pybird.resum module
Resum
Resum.co
Resum.LambdaIR
Resum.sr
Resum.sbao
Resum.snobao
Resum.kr
Resum.k2p
Resum.fftsettings
Resum.fft
Resum.M
Resum.kPow
Resum.Xfftsettings
Resum.Xfft
Resum.XM
Resum.XsPow
Resum.Cfftsettings
Resum.Cfft
Resum.Ml
Resum.sPow
Resum.dampPs
Resum.dampCf
Resum.optipath_cf
Resum.optipath_XpYpC
Resum.optipath_IRPs
Resum.optipath_k2IRPs
Resum.setXsPow()
Resum.setXM()
Resum.IRFilters()
Resum.setkPow()
Resum.setM()
Resum.IRn()
Resum.extractBAO()
Resum.setXpYp()
Resum.makeQ()
Resum.setMl()
Resum.setsPow()
Resum.Ps2Cf()
Resum.IRCf()
Resum.IRPs()
Resum.PsCf()
Resum.Ps()
Resum.setXsPow()
Resum.setXM()
Resum.IRFilters()
Resum.setkPow()
Resum.setM()
Resum.IRn()
Resum.extractBAO()
Resum.setXpYp()
Resum.makeQ()
Resum.setMl()
Resum.setsPow()
Resum.Ps2Cf()
Resum.IRCf()
Resum.PsCf()
Resum.Ps()
Resum.getIRPs()
Resum.IRPs()
- pybird.resumfactor module
- pybird.run module
- pybird.symbolic module
- pybird.symbolic_pofk_linear module
- pybird.utils module